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MolecularDocking.online vs Gemini Notebook

Features, pricing, ratings, and pros and cons, side by side.

Gemini Notebook logo

Gemini Notebook

Google's Gemini Notebook, formerly NotebookLM, answers questions and builds summaries from your own sources

Freemium
Visit websiteView details

Verdict

MolecularDocking.online is listed under Education & Research and Gemini Notebook under AI Assistants. Gemini Notebook scores higher in FinderAtlas's editorial review (8.7 vs 7.2 out of 10). Both have a free plan or trial. Only Gemini Notebook is available on iOS and Android.

Best overall

Gemini Notebook

  • Students
  • Researchers
  • Educators
  • Analysts

Choose MolecularDocking.online if

  • You want a tool built for small ligand sets.
  • No local install or Linux setup needed for AutoDock Vina.
  • Clear credit-based pricing from $9.99 per month, with one-time packs.

Choose Gemini Notebook if

  • You want a tool built for summarizing and questioning your own documents.
  • Answers cite the uploaded sources, so claims can be checked against the original text.
  • Free Standard tier with 100 notebooks and 50 sources per notebook.
Best for beginners
Gemini Notebook
Best for business
Gemini Notebook

Features

19 features compared.

  • Browser-based Vina docking
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Flexible inputs
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Automatic preparation
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Affinity tables
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Interaction analysis
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Pose quality checks
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Reports and exports
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Batch jobs
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Optional PyMOL figures
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Multilingual interface
    MolecularDocking.online
    Available
    Gemini Notebook
    Not available
  • Source-grounded chat
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Audio Overviews
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Video Overviews
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Study tools
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Reports, slide decks and infographics
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Multiple source types
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Cloud computer
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Gemini app sync
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available
  • Sharing and public notebooks
    MolecularDocking.online
    Not available
    Gemini Notebook
    Available

Pricing

Plans as listed by each vendor. Check their sites for current prices.

  • Pricing model
    MolecularDocking.online
    Freemium
    Gemini Notebook
    Freemium
  • Free plan
    MolecularDocking.online
    Yes
    Gemini Notebook
    Yes
  • Starting price
    MolecularDocking.online
    $0
    Gemini Notebook
    $0
  • Plans
    MolecularDocking.online
    6 plans
    Gemini Notebook
    5 plans

MolecularDocking.online plans

  • Free

    $0

    One-time credit at signup.

    • 1 credit at signup
    • 7-day result storage

  • Student

    $9.99/month

    Entry paid plan.

    • 5 credits per month
    • 14-day result storage

  • Research

    $24.99/month

    For regular use with parallel jobs.

    • 16 credits per month
    • 2 concurrent jobs
    • Priority queue
    • 30-day result storage

  • Lab

    $49.99/month

    For groups and heavier use.

    • 35 credits per month
    • 5 concurrent jobs
    • Priority queue
    • 90-day result storage

  • Single Run Pass

    $7.99/one-time

    One-time credit pack.

    • 3 credits

  • Screening Pack

    $19.99/one-time

    One-time credit pack.

    • 10 credits

Gemini Notebook plans

  • Standard

    $0

    Free with a Google Account

    • 100 notebooks
    • 50 sources per notebook
    • Audio Overviews
    • Chat with citations

  • Plus

    $4.99/month

    Through the Google AI Plus subscription

    • 200 notebooks
    • 100 sources per notebook
    • Early access to features
    • 2x higher usage than Free

  • Pro

    Most popular

    $19.99/month

    Through the Google AI Pro subscription

    • 500 notebooks
    • 300 sources per notebook
    • Higher Gemini model access
    • Priority access to new features
    • Watermark removal
    • 4x higher usage than Free

  • Ultra 5x

    $99.99/month

    Through the Google AI Ultra subscription

    • 500 notebooks
    • 500 sources per notebook
    • Highest Gemini model access
    • 5x higher usage limits than AI Pro
    • Cloud computer for code execution

  • Ultra 20x

    $199.99/month

    Through the Google AI Ultra subscription at the higher tier

    • 500 notebooks
    • 600 sources per notebook
    • Highest Gemini model access
    • 20x higher usage limits than AI Pro
    • Cloud computer for code execution

Our ratings

Scored out of 10 by the Finder Atlas editorial team. Last reviewed November 2026.

MolecularDocking.online
7.2overall
Gemini Notebook
8.7overall

  • Ease of Use

    MolecularDocking.online
    8.0
    Gemini Notebook
    Not rated

  • Report Quality

    MolecularDocking.online
    7.8
    Gemini Notebook
    Not rated

  • Pricing Clarity

    MolecularDocking.online
    8.0
    Gemini Notebook
    Not rated

  • Scientific Depth

    MolecularDocking.online
    6.8
    Gemini Notebook
    Not rated

  • Transparency

    MolecularDocking.online
    5.5
    Gemini Notebook
    Not rated

  • Grounded Citation Fidelity

    MolecularDocking.online
    Not rated
    Gemini Notebook
    8.8

  • Audio Overview Quality

    MolecularDocking.online
    Not rated
    Gemini Notebook
    8.7

  • Source Handling

    MolecularDocking.online
    Not rated
    Gemini Notebook
    8.6

  • Output Formats

    MolecularDocking.online
    Not rated
    Gemini Notebook
    8.8

  • Value for Money

    MolecularDocking.online
    Not rated
    Gemini Notebook
    8.5

Scores weigh documented features, plan value, platform coverage, integrations and user feedback. A missing score means we have not rated that area yet.

Pros and cons

MolecularDocking.online

Pros

  • No local install or Linux setup needed for AutoDock Vina
  • Clear credit-based pricing from $9.99 per month, with one-time packs
  • Reports include QC, interaction analysis, methods text and citations
  • Credits the open-source tools it builds on and states results need validation
  • Sample report with version numbers for the whole pipeline

Cons

  • Operator is not named; the terms say no separate corporate entity is stated
  • Rigid-receptor Vina only; no other docking engines
  • Free tier is a single one-time credit with 7-day storage
  • Refunds are limited to platform failures
  • Terms are governed by the laws of the People's Republic of China

Gemini Notebook

Pros

  • Answers cite the uploaded sources, so claims can be checked against the original text
  • Free Standard tier with 100 notebooks and 50 sources per notebook
  • Wide range of outputs, including Audio Overviews, Video Overviews, mind maps, flashcards, quizzes and slide decks
  • Accepts PDFs, websites, YouTube videos, audio files, Google Docs and Google Slides
  • Available on web, iOS and Android, and synced with the Gemini app

Cons

  • Works from the sources you add and is not built for live web news search
  • Higher limits require a Google AI subscription; Ultra starts at $99.99 per month
  • The cloud computer for code execution started with Ultra and Workspace AI Ultra Access customers, with Pro rollout still described as upcoming
  • No public API for the consumer product, and the renamed brand can make older guides and app listings confusing

Platforms

  • Web
    MolecularDocking.online
    Supported
    Gemini Notebook
    Supported
  • Windows
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Not supported
  • macOS
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Not supported
  • iOS
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Supported
  • Android
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Supported
  • API
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Not supported
  • Browser Extension
    MolecularDocking.online
    Not supported
    Gemini Notebook
    Not supported

Integrations

MolecularDocking.online

6 integrations
  • AutoDock Vina
  • Meeko
  • RDKit
  • PLIP
  • PoseBusters
  • PyMOL

Gemini Notebook

4 integrations
  • Google Docs
  • Google Slides
  • YouTube
  • Gemini app

Company

  • Company
    MolecularDocking.online
    Not listed
    Gemini Notebook
    Google LLC
  • Founded
    MolecularDocking.online
    Not listed
    Gemini Notebook
    1998
  • Headquarters
    MolecularDocking.online
    Not listed
    Gemini Notebook
    Mountain View, CA
  • Monthly users
    MolecularDocking.online
    Not listed
    Gemini Notebook
    30M+
  • Listing
    MolecularDocking.online
    Not claimed
    Gemini Notebook
    Claimed

Frequently asked questions

Is MolecularDocking.online better than Gemini Notebook?

It depends on your workflow. MolecularDocking.online is built for small ligand sets. Gemini Notebook is built for summarizing and questioning your own documents.

What are the key feature differences between MolecularDocking.online and Gemini Notebook?

MolecularDocking.online: One-click AutoDock Vina docking in the browser, no install. Gemini Notebook: Google's Gemini Notebook, formerly NotebookLM, answers questions and builds summaries from your own sources.

Does MolecularDocking.online or Gemini Notebook have a free plan?

Yes, both do. MolecularDocking.online is freemium and Gemini Notebook is freemium, and each has a free plan or trial.

Which is cheaper, MolecularDocking.online or Gemini Notebook?

Both can be used for free. Paid plans differ in limits and features, so compare the tiers in the pricing table above.